3D structure

PDB id
6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
6ZTJ|1|BA|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ZTJ_006 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.0785
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

6ZTJ|1|BA|C|268
6ZTJ|1|BA|C|269
*
6ZTJ|1|BA|G|370
6ZTJ|1|BA|A|371
6ZTJ|1|BA|G|372
6ZTJ|1|BA|U|373
6ZTJ|1|BA|A|374
6ZTJ|1|BA|G|375
*
6ZTJ|1|BA|U|399
6ZTJ|1|BA|G|400
6ZTJ|1|BA|A|401
6ZTJ|1|BA|A|402
6ZTJ|1|BA|U|403
6ZTJ|1|BA|A|404
6ZTJ|1|BA|U|405
6ZTJ|1|BA|G|406
*
6ZTJ|1|BA|C|421
6ZTJ|1|BA|A|422
6ZTJ|1|BA|A|423
6ZTJ|1|BA|G|424

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BH
50S ribosomal protein L9
Chain BY
50S ribosomal protein L28

Coloring options:


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