J4_6ZTJ_009

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

6ZTJ|1|BA|G|1271, 6ZTJ|1|BA|A|1272, 6ZTJ|1|BA|U|1273, 6ZTJ|1|BA|A|1275, 6ZTJ|1|BA|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTJ_009 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0831

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6ZTJ|1|BA|C|1270
6ZTJ|1|BA|G|1271
6ZTJ|1|BA|A|1272
6ZTJ|1|BA|U|1273
6ZTJ|1|BA|A|1274
6ZTJ|1|BA|A|1275
6ZTJ|1|BA|A|1276
*
6ZTJ|1|BA|U|1294
6ZTJ|1|BA|C|1295
*
6ZTJ|1|BA|G|1645
6ZTJ|1|BA|C|1646
6ZTJ|1|BA|U|1647
6ZTJ|1|BA|U|1648
*
6ZTJ|1|BA|A|2009
6ZTJ|1|BA|G|2010

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L32

Chain BO

50S ribosomal protein L17

Chain BT

50S ribosomal protein L22