J4_6ZTL_001

3D structure

PDB id

6ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state bound to NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6ZTL|1|AA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTL_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2446

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ZTL|1|AA|G|115
6ZTL|1|AA|A|116
6ZTL|1|AA|G|117
6ZTL|1|AA|U|118
6ZTL|1|AA|A|119
6ZTL|1|AA|A|120
6ZTL|1|AA|U|121
6ZTL|1|AA|G|122
*
6ZTL|1|AA|U|239
6ZTL|1|AA|G|240
*
6ZTL|1|AA|C|286
6ZTL|1|AA|U|287
6ZTL|1|AA|A|288
6ZTL|1|AA|G|289
*
6ZTL|1|AA|C|311
6ZTL|1|AA|C|312

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17