J4_6ZTM_001

3D structure

PDB id

6ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state without NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6ZTM|1|AA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTM_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1938

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ZTM|1|AA|G|115
6ZTM|1|AA|A|116
6ZTM|1|AA|G|117
6ZTM|1|AA|U|118
6ZTM|1|AA|A|119
6ZTM|1|AA|A|120
6ZTM|1|AA|U|121
6ZTM|1|AA|G|122
*
6ZTM|1|AA|U|239
6ZTM|1|AA|G|240
*
6ZTM|1|AA|C|286
6ZTM|1|AA|U|287
6ZTM|1|AA|A|288
6ZTM|1|AA|G|289
*
6ZTM|1|AA|C|311
6ZTM|1|AA|C|312

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17