J4_6ZTM_006
3D structure
- PDB id
- 6ZTM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-RNAP expressome complex in collided state without NusG
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CC*GAGUAG*UGAAUAUG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 6ZTM|1|BA|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZTM_006 not in the Motif Atlas
- Homologous match to J4_5J7L_018
- Geometric discrepancy: 0.0969
- The information below is about J4_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ZTM|1|BA|C|268
6ZTM|1|BA|C|269
*
6ZTM|1|BA|G|370
6ZTM|1|BA|A|371
6ZTM|1|BA|G|372
6ZTM|1|BA|U|373
6ZTM|1|BA|A|374
6ZTM|1|BA|G|375
*
6ZTM|1|BA|U|399
6ZTM|1|BA|G|400
6ZTM|1|BA|A|401
6ZTM|1|BA|A|402
6ZTM|1|BA|U|403
6ZTM|1|BA|A|404
6ZTM|1|BA|U|405
6ZTM|1|BA|G|406
*
6ZTM|1|BA|C|421
6ZTM|1|BA|A|422
6ZTM|1|BA|A|423
6ZTM|1|BA|G|424
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BH
- 50S ribosomal protein L9
- Chain BY
- 50S ribosomal protein L28
Coloring options: