3D structure

PDB id
6ZTN (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
6ZTN|1|AA|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ZTN_001 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.2008
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6ZTN|1|AA|G|115
6ZTN|1|AA|A|116
6ZTN|1|AA|G|117
6ZTN|1|AA|U|118
6ZTN|1|AA|A|119
6ZTN|1|AA|A|120
6ZTN|1|AA|U|121
6ZTN|1|AA|G|122
*
6ZTN|1|AA|U|239
6ZTN|1|AA|G|240
*
6ZTN|1|AA|C|286
6ZTN|1|AA|U|287
6ZTN|1|AA|A|288
6ZTN|1|AA|G|289
*
6ZTN|1|AA|C|311
6ZTN|1|AA|C|312

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AL
30S ribosomal protein S12
Chain AP
30S ribosomal protein S16
Chain AQ
30S ribosomal protein S17

Coloring options:


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