J4_6ZTN_002

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6ZTN|1|AA|C|183, 6ZTN|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTN_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1406

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6ZTN|1|AA|G|142
6ZTN|1|AA|A|143
6ZTN|1|AA|G|144
*
6ZTN|1|AA|C|178
6ZTN|1|AA|A|179
6ZTN|1|AA|U|180
6ZTN|1|AA|A|181
6ZTN|1|AA|A|182
6ZTN|1|AA|C|183
6ZTN|1|AA|G|184
*
6ZTN|1|AA|C|193
6ZTN|1|AA|C|194
6ZTN|1|AA|A|195
6ZTN|1|AA|A|196
6ZTN|1|AA|A|197
6ZTN|1|AA|G|198
*
6ZTN|1|AA|U|219
6ZTN|1|AA|G|220
6ZTN|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20