J4_6ZTN_012
3D structure
- PDB id
- 6ZTN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 6ZTN|1|BA|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZTN_012 not in the Motif Atlas
- Homologous match to J4_5J7L_023
- Geometric discrepancy: 0.0966
- The information below is about J4_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZTN|1|BA|U|1313
6ZTN|1|BA|C|1314
*
6ZTN|1|BA|G|1338
6ZTN|1|BA|G|1339
6ZTN|1|BA|U|1340
6ZTN|1|BA|G|1341
6ZTN|1|BA|A|1342
6ZTN|1|BA|G|1343
*
6ZTN|1|BA|C|1404
6ZTN|1|BA|U|1405
*
6ZTN|1|BA|A|1597
6ZTN|1|BA|A|1598
6ZTN|1|BA|U|1599
6ZTN|1|BA|C|1600
6ZTN|1|BA|G|1601
6ZTN|1|BA|U|1602
6ZTN|1|BA|A|1603
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BU
- 50S ribosomal protein L23
Coloring options: