J4_6ZTO_002

3D structure

PDB id

6ZTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6ZTO|1|AA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTO_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1344

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6ZTO|1|AA|G|142
6ZTO|1|AA|A|143
6ZTO|1|AA|G|144
*
6ZTO|1|AA|C|178
6ZTO|1|AA|A|179
6ZTO|1|AA|U|180
6ZTO|1|AA|A|181
6ZTO|1|AA|A|182
6ZTO|1|AA|C|183
6ZTO|1|AA|G|184
*
6ZTO|1|AA|C|193
6ZTO|1|AA|C|194
6ZTO|1|AA|A|195
6ZTO|1|AA|A|196
6ZTO|1|AA|A|197
6ZTO|1|AA|G|198
*
6ZTO|1|AA|U|219
6ZTO|1|AA|G|220
6ZTO|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20