J4_6ZTO_005
3D structure
- PDB id
- 6ZTO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-RNAP expressome complex in uncoupled state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)(3AU)CC*GU
- Length
- 16 nucleotides
- Bulged bases
- 6ZTO|1|AX|4SU|8, 6ZTO|1|AX|3AU|47, 6ZTO|1|AX|C|48
- QA status
- Modified nucleotides: 4SU, 7MG, 3AU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZTO_005 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.2085
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6ZTO|1|AX|A|7
6ZTO|1|AX|4SU|8
6ZTO|1|AX|A|9
6ZTO|1|AX|G|10
*
6ZTO|1|AX|C|25
6ZTO|1|AX|A|26
6ZTO|1|AX|G|27
*
6ZTO|1|AX|C|43
6ZTO|1|AX|G|44
6ZTO|1|AX|U|45
6ZTO|1|AX|7MG|46
6ZTO|1|AX|3AU|47
6ZTO|1|AX|C|48
6ZTO|1|AX|C|49
*
6ZTO|1|AX|G|65
6ZTO|1|AX|U|66
Current chains
- Chain AX
- Phe-NH-tRNA(Phe) A-site
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: