3D structure

PDB id
6ZTP (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in uncoupled state 6
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
6ZTP|1|AA|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ZTP_001 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.2012
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6ZTP|1|AA|G|115
6ZTP|1|AA|A|116
6ZTP|1|AA|G|117
6ZTP|1|AA|U|118
6ZTP|1|AA|A|119
6ZTP|1|AA|A|120
6ZTP|1|AA|U|121
6ZTP|1|AA|G|122
*
6ZTP|1|AA|U|239
6ZTP|1|AA|G|240
*
6ZTP|1|AA|C|286
6ZTP|1|AA|U|287
6ZTP|1|AA|A|288
6ZTP|1|AA|G|289
*
6ZTP|1|AA|C|311
6ZTP|1|AA|C|312

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AP
30S ribosomal protein S16
Chain AQ
30S ribosomal protein S17

Coloring options:


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