J4_6ZTP_011

3D structure

PDB id

6ZTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 6

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6ZTP|1|BA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTP_011 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0569

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZTP|1|BA|U|1313
6ZTP|1|BA|C|1314
*
6ZTP|1|BA|G|1338
6ZTP|1|BA|G|1339
6ZTP|1|BA|U|1340
6ZTP|1|BA|G|1341
6ZTP|1|BA|A|1342
6ZTP|1|BA|G|1343
*
6ZTP|1|BA|C|1404
6ZTP|1|BA|U|1405
*
6ZTP|1|BA|A|1597
6ZTP|1|BA|A|1598
6ZTP|1|BA|U|1599
6ZTP|1|BA|C|1600
6ZTP|1|BA|G|1601
6ZTP|1|BA|U|1602
6ZTP|1|BA|A|1603

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L23