J4_6ZU1_002

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6ZU1|1|AA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZU1_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1344

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6ZU1|1|AA|G|142
6ZU1|1|AA|A|143
6ZU1|1|AA|G|144
*
6ZU1|1|AA|C|178
6ZU1|1|AA|A|179
6ZU1|1|AA|U|180
6ZU1|1|AA|A|181
6ZU1|1|AA|A|182
6ZU1|1|AA|C|183
6ZU1|1|AA|G|184
*
6ZU1|1|AA|C|193
6ZU1|1|AA|C|194
6ZU1|1|AA|A|195
6ZU1|1|AA|A|196
6ZU1|1|AA|A|197
6ZU1|1|AA|G|198
*
6ZU1|1|AA|U|219
6ZU1|1|AA|G|220
6ZU1|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20