J4_6ZU1_006

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6ZU1|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZU1_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0876

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6ZU1|1|BA|C|268
6ZU1|1|BA|C|269
*
6ZU1|1|BA|G|370
6ZU1|1|BA|A|371
6ZU1|1|BA|G|372
6ZU1|1|BA|U|373
6ZU1|1|BA|A|374
6ZU1|1|BA|G|375
*
6ZU1|1|BA|U|399
6ZU1|1|BA|G|400
6ZU1|1|BA|A|401
6ZU1|1|BA|A|402
6ZU1|1|BA|U|403
6ZU1|1|BA|A|404
6ZU1|1|BA|U|405
6ZU1|1|BA|G|406
*
6ZU1|1|BA|C|421
6ZU1|1|BA|A|422
6ZU1|1|BA|A|423
6ZU1|1|BA|G|424

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BY

50S ribosomal protein L28