J4_6ZU1_011

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6ZU1|1|BA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZU1_011 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0569

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZU1|1|BA|U|1313
6ZU1|1|BA|C|1314
*
6ZU1|1|BA|G|1338
6ZU1|1|BA|G|1339
6ZU1|1|BA|U|1340
6ZU1|1|BA|G|1341
6ZU1|1|BA|A|1342
6ZU1|1|BA|G|1343
*
6ZU1|1|BA|C|1404
6ZU1|1|BA|U|1405
*
6ZU1|1|BA|A|1597
6ZU1|1|BA|A|1598
6ZU1|1|BA|U|1599
6ZU1|1|BA|C|1600
6ZU1|1|BA|G|1601
6ZU1|1|BA|U|1602
6ZU1|1|BA|A|1603

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L23