J4_6ZU5_007

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6ZU5|1|L50|U|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZU5_007 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.0936

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZU5|1|L50|C|1661
6ZU5|1|L50|U|1662
6ZU5|1|L50|G|1663
*
6ZU5|1|L50|C|1717
6ZU5|1|L50|G|1718
*
6ZU5|1|L50|C|1736
6ZU5|1|L50|U|1737
6ZU5|1|L50|U|1738
6ZU5|1|L50|A|1739
6ZU5|1|L50|A|1740
6ZU5|1|L50|G|1741
6ZU5|1|L50|G|1742
6ZU5|1|L50|U|1743
6ZU5|1|L50|A|1744
6ZU5|1|L50|G|1745
*
6ZU5|1|L50|U|1779
6ZU5|1|L50|G|1780
6ZU5|1|L50|A|1781
6ZU5|1|L50|A|1782
6ZU5|1|L50|U|1783
6ZU5|1|L50|G|1784

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LA0

uL2

Chain LNN

Lso2

Chain S60

Small subunit ribosomal RNA; SSU rRNA