J4_6ZU5_009

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUACG*CUCAC*GGC*GGG

Length

16 nucleotides

Bulged bases

6ZU5|1|L50|C|2054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZU5_009 not in the Motif Atlas

Homologous match to J4_8C3A_008

Geometric discrepancy: 0.1612

The information below is about J4_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZU5|1|L50|C|2051
6ZU5|1|L50|U|2052
6ZU5|1|L50|A|2053
6ZU5|1|L50|C|2054
6ZU5|1|L50|G|2055
*
6ZU5|1|L50|C|2109
6ZU5|1|L50|U|2110
6ZU5|1|L50|C|2111
6ZU5|1|L50|A|2112
6ZU5|1|L50|C|2113
*
6ZU5|1|L50|G|2132
6ZU5|1|L50|G|2133
6ZU5|1|L50|C|2134
*
6ZU5|1|L50|G|2143
6ZU5|1|L50|G|2144
6ZU5|1|L50|G|2145

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LBB

eL29

Chain LD0

uL18

Chain LOO

eL42

Chain LT0

eL21