J4_6ZU5_013

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGAGACAAG*CAUGGACAGG*CGGACAG*CGG

Length

30 nucleotides

Bulged bases

6ZU5|1|S60|G|120, 6ZU5|1|S60|C|122, 6ZU5|1|S60|A|123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZU5|1|S60|C|116
6ZU5|1|S60|A|117
6ZU5|1|S60|G|118
6ZU5|1|S60|A|119
6ZU5|1|S60|G|120
6ZU5|1|S60|A|121
6ZU5|1|S60|C|122
6ZU5|1|S60|A|123
6ZU5|1|S60|A|124
6ZU5|1|S60|G|125
*
6ZU5|1|S60|C|153
6ZU5|1|S60|A|154
6ZU5|1|S60|U|155
6ZU5|1|S60|G|156
6ZU5|1|S60|G|157
6ZU5|1|S60|A|158
6ZU5|1|S60|C|159
6ZU5|1|S60|A|160
6ZU5|1|S60|G|161
6ZU5|1|S60|G|162
*
6ZU5|1|S60|C|188
6ZU5|1|S60|G|189
6ZU5|1|S60|G|190
6ZU5|1|S60|A|191
6ZU5|1|S60|C|192
6ZU5|1|S60|A|193
6ZU5|1|S60|G|194
*
6ZU5|1|S60|C|199
6ZU5|1|S60|G|200
6ZU5|1|S60|G|201

Current chains

Chain S60

18S rRNA

Nearby chains

Chain SE0

eS4

Chain SG0

eS6

Chain SI0

eS8