J4_6ZU9_001
3D structure
- PDB id
- 6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast ABCE1-bound 48S initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- GU(1MG)(2MG)*C(M2G)C*GAU(G7M)(H2U)(5MC)(5MC)*GC
- Length
- 16 nucleotides
- Bulged bases
- 6ZU9|1|1|U|8, 6ZU9|1|1|H2U|47, 6ZU9|1|1|5MC|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZU9_001 not in the Motif Atlas
- Homologous match to J4_6UGG_002
- Geometric discrepancy: 0.4416
- The information below is about J4_6UGG_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
6ZU9|1|1|G|7
6ZU9|1|1|U|8
6ZU9|1|1|1MG|9
6ZU9|1|1|2MG|10
*
6ZU9|1|1|C|25
6ZU9|1|1|M2G|26
6ZU9|1|1|C|27
*
6ZU9|1|1|G|43
6ZU9|1|1|A|44
6ZU9|1|1|U|45
6ZU9|1|1|G7M|46
6ZU9|1|1|H2U|47
6ZU9|1|1|5MC|48
6ZU9|1|1|5MC|49
*
6ZU9|1|1|G|65
6ZU9|1|1|C|66
Current chains
- Chain 1
- tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 40S ribosomal protein S25-A
- Chain m
- Eukaryotic translation initiation factor 5
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