J4_6ZVI_001

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUAG*CAGG*CCGUGUCC*GU

Length

18 nucleotides

Bulged bases

6ZVI|1|d|U|8, 6ZVI|1|d|U|47, 6ZVI|1|d|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZVI_001 not in the Motif Atlas

Homologous match to J4_4RDX_001

Geometric discrepancy: 0.3865

The information below is about J4_4RDX_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVI|1|d|A|7
6ZVI|1|d|U|8
6ZVI|1|d|A|9
6ZVI|1|d|G|10
*
6ZVI|1|d|C|25
6ZVI|1|d|A|26
6ZVI|1|d|G|27
6ZVI|1|d|G|28
*
6ZVI|1|d|C|42
6ZVI|1|d|C|43
6ZVI|1|d|G|44
6ZVI|1|d|U|45
6ZVI|1|d|G|46
6ZVI|1|d|U|47
6ZVI|1|d|C|48
6ZVI|1|d|C|49
*
6ZVI|1|d|G|65
6ZVI|1|d|U|66

Current chains

Chain d

A/P-site tRNA

Nearby chains

Chain h

Small subunit ribosomal RNA; SSU rRNA

Chain x

RPS15 isoform 1