J4_6ZVK_006

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6ZVK|1|e2|A|2366, 6ZVK|1|e2|U|2369, 6ZVK|1|e2|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|C|2365
6ZVK|1|e2|A|2366
6ZVK|1|e2|A|2367
6ZVK|1|e2|A|2368
6ZVK|1|e2|U|2369
6ZVK|1|e2|A|2370
6ZVK|1|e2|U|2371
*
6ZVK|1|e2|A|2389
6ZVK|1|e2|G|2390
6ZVK|1|e2|G|2391
*
6ZVK|1|e2|C|2824
6ZVK|1|e2|A|2825
6ZVK|1|e2|U|2826
6ZVK|1|e2|G|2827
6ZVK|1|e2|U|2828
6ZVK|1|e2|U|2829
*
6ZVK|1|e2|A|3856
6ZVK|1|e2|G|3857

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain H2

uL22

Chain u2

eL31