J4_6ZVK_007
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6ZVK|1|e2|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZVK_007 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.1168
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|e2|G|2406
6ZVK|1|e2|G|2407
6ZVK|1|e2|U|2408
6ZVK|1|e2|U|2409
6ZVK|1|e2|C|2410
*
6ZVK|1|e2|G|2434
6ZVK|1|e2|G|2435
6ZVK|1|e2|U|2436
6ZVK|1|e2|C|2437
6ZVK|1|e2|A|2438
6ZVK|1|e2|G|2439
*
6ZVK|1|e2|U|2538
6ZVK|1|e2|C|2539
*
6ZVK|1|e2|G|2777
6ZVK|1|e2|G|2778
6ZVK|1|e2|C|2779
6ZVK|1|e2|C|2780
6ZVK|1|e2|G|2781
6ZVK|1|e2|U|2782
6ZVK|1|e2|A|2783
6ZVK|1|e2|C|2784
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 32
- 60S RIBOSOMAL PROTEIN EL19
- Chain A2
- uL29
- Chain C2
- Ribosomal protein L37
- Chain D2
- ribosomal protein eL39
- Chain h2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain m2
- 60S RIBOSOMAL PROTEIN UL23
- Chain p2
- 60S RIBOSOMAL PROTEIN EL38
- Chain y2
- eL34
Coloring options: