J4_6ZVK_012

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

6ZVK|1|e2|U|4677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|4587
6ZVK|1|e2|U|4588
6ZVK|1|e2|A|4589
6ZVK|1|e2|A|4590
*
6ZVK|1|e2|U|4620
6ZVK|1|e2|C|4621
*
6ZVK|1|e2|G|4676
6ZVK|1|e2|U|4677
6ZVK|1|e2|G|4678
*
6ZVK|1|e2|C|4712
6ZVK|1|e2|G|4713
6ZVK|1|e2|C|4714
6ZVK|1|e2|C|4715

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain k2

eL14

Chain w2

60S RIBOSOMAL PROTEIN UL13