J4_7A01_007
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 7A01|1|e2|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7A01_007 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.1246
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|e2|G|2406
7A01|1|e2|G|2407
7A01|1|e2|U|2408
7A01|1|e2|U|2409
7A01|1|e2|C|2410
*
7A01|1|e2|G|2434
7A01|1|e2|G|2435
7A01|1|e2|U|2436
7A01|1|e2|C|2437
7A01|1|e2|A|2438
7A01|1|e2|G|2439
*
7A01|1|e2|U|2538
7A01|1|e2|C|2539
*
7A01|1|e2|G|2777
7A01|1|e2|G|2778
7A01|1|e2|C|2779
7A01|1|e2|C|2780
7A01|1|e2|G|2781
7A01|1|e2|U|2782
7A01|1|e2|A|2783
7A01|1|e2|C|2784
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 32
- 60S RIBOSOMAL PROTEIN EL19
- Chain A2
- uL29
- Chain C2
- Ribosomal protein L37
- Chain D2
- ribosomal protein eL39
- Chain h2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain m2
- Uncharacterized protein
- Chain p2
- Uncharacterized protein
- Chain y2
- eL34
Coloring options: