J4_7ABZ_002

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ABZ_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1037

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7ABZ|1|1|G|297
7ABZ|1|1|G|298
7ABZ|1|1|A|299
7ABZ|1|1|A|300
7ABZ|1|1|G|301
*
7ABZ|1|1|C|316
7ABZ|1|1|G|317
7ABZ|1|1|C|318
7ABZ|1|1|G|319
*
7ABZ|1|1|C|323
7ABZ|1|1|A|324
7ABZ|1|1|G|325
*
7ABZ|1|1|C|337
7ABZ|1|1|G|338
7ABZ|1|1|U|339
7ABZ|1|1|A|340
7ABZ|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24