J4_7ABZ_017
3D structure
- PDB id
- 7ABZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.21 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(G7M)(3AU)CC*GU
- Length
- 16 nucleotides
- Bulged bases
- 7ABZ|1|7|4SU|8, 7ABZ|1|7|3AU|47, 7ABZ|1|7|C|48
- QA status
- Modified nucleotides: 4SU, G7M, 3AU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ABZ_017 not in the Motif Atlas
- Homologous match to J4_7YSE_001
- Geometric discrepancy: 0.3457
- The information below is about J4_7YSE_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
7ABZ|1|7|A|7
7ABZ|1|7|4SU|8
7ABZ|1|7|A|9
7ABZ|1|7|G|10
*
7ABZ|1|7|C|25
7ABZ|1|7|A|26
7ABZ|1|7|G|27
*
7ABZ|1|7|C|43
7ABZ|1|7|G|44
7ABZ|1|7|U|45
7ABZ|1|7|G7M|46
7ABZ|1|7|3AU|47
7ABZ|1|7|C|48
7ABZ|1|7|C|49
*
7ABZ|1|7|G|65
7ABZ|1|7|U|66
Current chains
- Chain 7
- tRNA-Phe
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain r
- 30S ribosomal protein S13
Coloring options: