J4_7ACJ_005

3D structure

PDB id

7ACJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7ACJ|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ACJ_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1354

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ACJ|1|1|G|1310
7ACJ|1|1|G|1311
7ACJ|1|1|U|1312
7ACJ|1|1|U|1313
7ACJ|1|1|C|1314
*
7ACJ|1|1|G|1338
7ACJ|1|1|G|1339
7ACJ|1|1|U|1340
7ACJ|1|1|G|1341
7ACJ|1|1|A|1342
7ACJ|1|1|G|1343
*
7ACJ|1|1|C|1404
7ACJ|1|1|U|1405
*
7ACJ|1|1|A|1597
7ACJ|1|1|A|1598
7ACJ|1|1|U|1599
7ACJ|1|1|C|1600
7ACJ|1|1|G|1601
7ACJ|1|1|U|1602
7ACJ|1|1|A|1603
7ACJ|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34