J4_7ACR_013

3D structure

PDB id

7ACR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of post-translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7ACR|1|2|C|183, 7ACR|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ACR_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.172

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7ACR|1|2|G|142
7ACR|1|2|A|143
7ACR|1|2|G|144
*
7ACR|1|2|C|178
7ACR|1|2|A|179
7ACR|1|2|U|180
7ACR|1|2|A|181
7ACR|1|2|A|182
7ACR|1|2|C|183
7ACR|1|2|G|184
*
7ACR|1|2|C|193
7ACR|1|2|C|194
7ACR|1|2|A|195
7ACR|1|2|A|196
7ACR|1|2|A|197
7ACR|1|2|G|198
*
7ACR|1|2|U|219
7ACR|1|2|G|220
7ACR|1|2|C|221

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20