J4_7AFI_002

3D structure

PDB id

7AFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state C (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7AFI|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AFI_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1205

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7AFI|1|A|G|142
7AFI|1|A|A|143
7AFI|1|A|G|144
*
7AFI|1|A|C|178
7AFI|1|A|A|179
7AFI|1|A|U|180
7AFI|1|A|A|181
7AFI|1|A|A|182
7AFI|1|A|C|183
7AFI|1|A|G|184
*
7AFI|1|A|C|193
7AFI|1|A|C|194
7AFI|1|A|A|195
7AFI|1|A|A|196
7AFI|1|A|A|197
7AFI|1|A|G|198
*
7AFI|1|A|U|219
7AFI|1|A|G|220
7AFI|1|A|C|221

Current chains

Chain A

16SrRNA

Nearby chains

Chain T

30S ribosomal protein S20