J4_7AFL_001

3D structure

PDB id

7AFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7AFL|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AFL_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2958

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7AFL|1|A|G|115
7AFL|1|A|A|116
7AFL|1|A|G|117
7AFL|1|A|U|118
7AFL|1|A|A|119
7AFL|1|A|A|120
7AFL|1|A|U|121
7AFL|1|A|G|122
*
7AFL|1|A|U|239
7AFL|1|A|G|240
*
7AFL|1|A|C|286
7AFL|1|A|U|287
7AFL|1|A|A|288
7AFL|1|A|G|289
*
7AFL|1|A|C|311
7AFL|1|A|C|312

Current chains

Chain A

16SrRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17