J4_7AFO_001

3D structure

PDB id

7AFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7AFO|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AFO_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2945

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7AFO|1|A|G|115
7AFO|1|A|A|116
7AFO|1|A|G|117
7AFO|1|A|U|118
7AFO|1|A|A|119
7AFO|1|A|A|120
7AFO|1|A|U|121
7AFO|1|A|G|122
*
7AFO|1|A|U|239
7AFO|1|A|G|240
*
7AFO|1|A|C|286
7AFO|1|A|U|287
7AFO|1|A|A|288
7AFO|1|A|G|289
*
7AFO|1|A|C|311
7AFO|1|A|C|312

Current chains

Chain A

16SrRNA (body domain of the 30S ribosome)

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17