J4_7AJT_002

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GCACCACCAGGAGUGGA*UAC*GGAAUUCCUAGUAAGC*GUUGAUUACGUCCCUGC

Length

53 nucleotides

Bulged bases

7AJT|1|D3|C|1159, 7AJT|1|D3|A|1614, 7AJT|1|D3|C|1615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AJT|1|D3|G|1155
7AJT|1|D3|C|1156
7AJT|1|D3|A|1157
7AJT|1|D3|C|1158
7AJT|1|D3|C|1159
7AJT|1|D3|A|1160
7AJT|1|D3|C|1161
7AJT|1|D3|C|1162
7AJT|1|D3|A|1163
7AJT|1|D3|G|1164
7AJT|1|D3|G|1165
7AJT|1|D3|A|1166
7AJT|1|D3|G|1167
7AJT|1|D3|U|1168
7AJT|1|D3|G|1169
7AJT|1|D3|G|1170
7AJT|1|D3|A|1171
*
7AJT|1|D3|U|1468
7AJT|1|D3|A|1469
7AJT|1|D3|C|1470
*
7AJT|1|D3|G|1574
7AJT|1|D3|G|1575
7AJT|1|D3|A|1576
7AJT|1|D3|A|1577
7AJT|1|D3|U|1578
7AJT|1|D3|U|1579
7AJT|1|D3|C|1580
7AJT|1|D3|C|1581
7AJT|1|D3|U|1582
7AJT|1|D3|A|1583
7AJT|1|D3|G|1584
7AJT|1|D3|U|1585
7AJT|1|D3|A|1586
7AJT|1|D3|A|1587
7AJT|1|D3|G|1588
7AJT|1|D3|C|1589
*
7AJT|1|D3|G|1607
7AJT|1|D3|U|1608
7AJT|1|D3|U|1609
7AJT|1|D3|G|1610
7AJT|1|D3|A|1611
7AJT|1|D3|U|1612
7AJT|1|D3|U|1613
7AJT|1|D3|A|1614
7AJT|1|D3|C|1615
7AJT|1|D3|G|1616
7AJT|1|D3|U|1617
7AJT|1|D3|C|1618
7AJT|1|D3|C|1619
7AJT|1|D3|C|1620
7AJT|1|D3|U|1621
7AJT|1|D3|G|1622
7AJT|1|D3|C|1623

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain DF

40S ribosomal protein S5

Chain DQ

40S ribosomal protein S16-A

Chain Dc

40S ribosomal protein S28-A

Chain JG

Ribosomal RNA small subunit methyltransferase NEP1

Chain UA

Periodic tryptophan protein 2

Chain UL

U3 small nucleolar RNA-associated protein 12