J4_7AJU_002

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAAAAG*CGAAAG*CCAUAAACUAUG*UUC

Length

30 nucleotides

Bulged bases

7AJU|1|D3|A|623, 7AJU|1|D3|A|1026, 7AJU|1|D3|U|1029, 7AJU|1|D3|U|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AJU|1|D3|G|616
7AJU|1|D3|U|617
7AJU|1|D3|U|618
7AJU|1|D3|A|619
7AJU|1|D3|A|620
7AJU|1|D3|A|621
7AJU|1|D3|A|622
7AJU|1|D3|A|623
7AJU|1|D3|G|624
*
7AJU|1|D3|C|975
7AJU|1|D3|G|976
7AJU|1|D3|A|977
7AJU|1|D3|A|978
7AJU|1|D3|A|979
7AJU|1|D3|G|980
*
7AJU|1|D3|C|1021
7AJU|1|D3|C|1022
7AJU|1|D3|A|1023
7AJU|1|D3|U|1024
7AJU|1|D3|A|1025
7AJU|1|D3|A|1026
7AJU|1|D3|A|1027
7AJU|1|D3|C|1028
7AJU|1|D3|U|1029
7AJU|1|D3|A|1030
7AJU|1|D3|U|1031
7AJU|1|D3|G|1032
*
7AJU|1|D3|U|1103
7AJU|1|D3|U|1104
7AJU|1|D3|C|1105

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain D4

U3 small nucleolar RNA; U3 snoRNA

Chain DL

40S ribosomal protein S11-A

Chain DN

40S ribosomal protein S13

Chain DO

40S ribosomal protein S14-A

Chain DW

40S ribosomal protein S22-A

Chain DX

40S ribosomal protein S23-A

Chain JL

Dimethyladenosine transferase

Chain UG

U3 small nucleolar RNA-associated protein 7