J4_7AQD_002

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAG*CGCC*GGA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AQD_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1399

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7AQD|1|A|U|340
7AQD|1|A|G|341
7AQD|1|A|A|342
7AQD|1|A|A|343
7AQD|1|A|G|344
*
7AQD|1|A|C|360
7AQD|1|A|G|361
7AQD|1|A|C|362
7AQD|1|A|C|363
*
7AQD|1|A|G|367
7AQD|1|A|G|368
7AQD|1|A|A|369
*
7AQD|1|A|U|381
7AQD|1|A|G|382
7AQD|1|A|U|383
7AQD|1|A|A|384
7AQD|1|A|G|385

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24