J4_7AQD_004
3D structure
- PDB id
- 7AQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the bacterial RQC complex (Translocating State)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAG*CC*GAUC*GG
- Length
- 14 nucleotides
- Bulged bases
- 7AQD|1|A|G|1311, 7AQD|1|A|A|1312, 7AQD|1|A|A|1314, 7AQD|1|A|U|1692
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7AQD_004 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.1811
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7AQD|1|A|C|1310
7AQD|1|A|G|1311
7AQD|1|A|A|1312
7AQD|1|A|A|1313
7AQD|1|A|A|1314
7AQD|1|A|G|1315
*
7AQD|1|A|C|1333
7AQD|1|A|C|1334
*
7AQD|1|A|G|1690
7AQD|1|A|A|1691
7AQD|1|A|U|1692
7AQD|1|A|C|1693
*
7AQD|1|A|G|2038
7AQD|1|A|G|2039
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
Coloring options: