J4_7AQD_012
3D structure
- PDB id
- 7AQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the bacterial RQC complex (Translocating State)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUAG*CGC*GAGGUCA*UA
- Length
- 16 nucleotides
- Bulged bases
- 7AQD|1|T|U|8, 7AQD|1|T|U|47, 7AQD|1|T|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7AQD_012 not in the Motif Atlas
- Homologous match to J4_6UGG_002
- Geometric discrepancy: 0.25
- The information below is about J4_6UGG_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
7AQD|1|T|U|7
7AQD|1|T|U|8
7AQD|1|T|A|9
7AQD|1|T|G|10
*
7AQD|1|T|C|25
7AQD|1|T|G|26
7AQD|1|T|C|27
*
7AQD|1|T|G|43
7AQD|1|T|A|44
7AQD|1|T|G|45
7AQD|1|T|G|46
7AQD|1|T|U|47
7AQD|1|T|C|48
7AQD|1|T|A|49
*
7AQD|1|T|U|65
7AQD|1|T|A|66
Current chains
- Chain T
- Ala-tRNA (A/P-site)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain R
- Rqc2 homolog RqcH
Coloring options: