J4_7AS8_001

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

7AS8|1|A|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AS8_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1589

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7AS8|1|A|C|271
7AS8|1|A|C|272
*
7AS8|1|A|G|417
7AS8|1|A|A|418
7AS8|1|A|G|419
7AS8|1|A|U|420
7AS8|1|A|A|421
7AS8|1|A|C|422
*
7AS8|1|A|G|446
7AS8|1|A|G|447
7AS8|1|A|A|448
7AS8|1|A|A|449
7AS8|1|A|U|450
7AS8|1|A|C|451
7AS8|1|A|C|452
7AS8|1|A|G|453
*
7AS8|1|A|C|468
7AS8|1|A|A|469
7AS8|1|A|A|470
7AS8|1|A|G|471

Current chains

Chain A

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L28