J4_7ASM_001

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7ASM|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ASM_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1186

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7ASM|1|A|C|271
7ASM|1|A|C|272
*
7ASM|1|A|G|416
7ASM|1|A|A|417
7ASM|1|A|G|418
7ASM|1|A|U|419
7ASM|1|A|A|420
7ASM|1|A|C|421
*
7ASM|1|A|G|445
7ASM|1|A|G|446
7ASM|1|A|A|447
7ASM|1|A|A|448
7ASM|1|A|U|449
7ASM|1|A|C|450
7ASM|1|A|U|451
7ASM|1|A|G|452
*
7ASM|1|A|U|467
7ASM|1|A|A|468
7ASM|1|A|A|469
7ASM|1|A|G|470

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L28