J4_7ASM_009

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

7ASM|1|A|A|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ASM_009 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.5573

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7ASM|1|A|G|2670
7ASM|1|A|A|2671
7ASM|1|A|G|2672
7ASM|1|A|C|2673
*
7ASM|1|A|G|2701
7ASM|1|A|A|2702
7ASM|1|A|C|2703
*
7ASM|1|A|G|2758
7ASM|1|A|G|2759
7ASM|1|A|A|2760
7ASM|1|A|C|2761
7ASM|1|A|G|2762
*
7ASM|1|A|C|2796
7ASM|1|A|C|2797
7ASM|1|A|C|2798

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain H

50S ribosomal protein L13

Chain I

50S ribosomal protein L14