J4_7ASN_002

3D structure

PDB id

7ASN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation a 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ASN_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.0993

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7ASN|1|A|C|340
7ASN|1|A|G|341
7ASN|1|A|A|342
7ASN|1|A|A|343
7ASN|1|A|U|344
*
7ASN|1|A|A|359
7ASN|1|A|A|360
7ASN|1|A|U|361
7ASN|1|A|C|362
*
7ASN|1|A|G|366
7ASN|1|A|A|367
7ASN|1|A|A|368
*
7ASN|1|A|U|380
7ASN|1|A|G|381
7ASN|1|A|U|382
7ASN|1|A|A|383
7ASN|1|A|G|384

Current chains

Chain A

23S

Nearby chains

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L24