J4_7AZO_012

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

7AZO|1|23SA|A|1494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZO_012 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.2032

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7AZO|1|23SA|G|1493
7AZO|1|23SA|A|1494
7AZO|1|23SA|C|1495
*
7AZO|1|23SA|G|1516
7AZO|1|23SA|C|1517
*
7AZO|1|23SA|G|1574
7AZO|1|23SA|G|1575
*
7AZO|1|23SA|C|1596
7AZO|1|23SA|C|1597

Current chains

Chain 23SA

23S rRNA

Nearby chains