J4_7AZO_023

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZO_023 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0498

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7AZO|1|23SB|G|1806
7AZO|1|23SB|A|1807
7AZO|1|23SB|C|1808
7AZO|1|23SB|U|1809
7AZO|1|23SB|G|1810
*
7AZO|1|23SB|C|1822
7AZO|1|23SB|A|1823
7AZO|1|23SB|C|1824
7AZO|1|23SB|A|1825
7AZO|1|23SB|G|1826
*
7AZO|1|23SB|C|1861
7AZO|1|23SB|G|1862
7AZO|1|23SB|A|1863
7AZO|1|23SB|C|1864
*
7AZO|1|23SB|G|2000
7AZO|1|23SB|U|2001
7AZO|1|23SB|A|2002
7AZO|1|23SB|A|2003
7AZO|1|23SB|C|2004

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain 16SB

Small subunit ribosomal RNA; SSU rRNA

Chain L2B

50S ribosomal protein L2