J4_7AZS_004

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

7AZS|1|16SB|C|760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZS_004 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0854

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7AZS|1|16SB|G|754
7AZS|1|16SB|A|755
7AZS|1|16SB|G|756
7AZS|1|16SB|U|757
7AZS|1|16SB|A|758
7AZS|1|16SB|A|759
7AZS|1|16SB|C|760
7AZS|1|16SB|G|761
*
7AZS|1|16SB|U|880
7AZS|1|16SB|C|881
*
7AZS|1|16SB|G|927
7AZS|1|16SB|U|928
7AZS|1|16SB|A|929
7AZS|1|16SB|G|930
*
7AZS|1|16SB|C|952
7AZS|1|16SB|C|953

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S12B

30S ribosomal protein S12

Chain S16B

30S ribosomal protein S16

Chain S17B

30S ribosomal protein S17