J4_7AZS_005

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUGG*CCAAAG*CGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZS_005 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.5071

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7AZS|1|16SB|G|782
7AZS|1|16SB|A|783
7AZS|1|16SB|G|784
*
7AZS|1|16SB|C|818
7AZS|1|16SB|A|819
7AZS|1|16SB|U|820
7AZS|1|16SB|G|821
7AZS|1|16SB|U|822
7AZS|1|16SB|G|823
7AZS|1|16SB|G|824
*
7AZS|1|16SB|C|845
7AZS|1|16SB|C|846
7AZS|1|16SB|A|847
7AZS|1|16SB|A|848
7AZS|1|16SB|A|849
7AZS|1|16SB|G|850
*
7AZS|1|16SB|C|860
7AZS|1|16SB|G|861
7AZS|1|16SB|C|862

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S16B

30S ribosomal protein S16

Chain S20B

30S ribosomal protein S20