J4_7AZS_006
3D structure
- PDB id
- 7AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 7AZS|1|16SB|G|1205, 7AZS|1|16SB|A|1444
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7AZS_006 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0619
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7AZS|1|16SB|G|1204
7AZS|1|16SB|G|1205
7AZS|1|16SB|G|1206
*
7AZS|1|16SB|C|1393
7AZS|1|16SB|G|1394
7AZS|1|16SB|A|1395
7AZS|1|16SB|A|1396
7AZS|1|16SB|A|1397
7AZS|1|16SB|G|1398
*
7AZS|1|16SB|C|1439
7AZS|1|16SB|C|1440
7AZS|1|16SB|C|1441
7AZS|1|16SB|U|1442
7AZS|1|16SB|A|1443
7AZS|1|16SB|A|1444
7AZS|1|16SB|A|1445
7AZS|1|16SB|C|1446
7AZS|1|16SB|G|1447
7AZS|1|16SB|A|1448
7AZS|1|16SB|U|1449
7AZS|1|16SB|G|1450
*
7AZS|1|16SB|C|1502
7AZS|1|16SB|C|1503
Current chains
- Chain 16SB
- 16S rRNA
Nearby chains
- Chain 23SB
- Large subunit ribosomal RNA; LSU rRNA
- Chain S12B
- 30S ribosomal protein S12
- Chain S15B
- 30S ribosomal protein S15
- Chain S17B
- 30S ribosomal protein S17
- Chain S8B
- 30S ribosomal protein S8
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