J4_7AZS_020

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

7AZS|1|23SB|U|1390

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZS_020 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0912

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7AZS|1|23SB|G|1359
7AZS|1|23SB|G|1360
7AZS|1|23SB|U|1361
7AZS|1|23SB|U|1362
7AZS|1|23SB|C|1363
*
7AZS|1|23SB|G|1387
7AZS|1|23SB|G|1388
7AZS|1|23SB|U|1389
7AZS|1|23SB|U|1390
7AZS|1|23SB|A|1391
7AZS|1|23SB|G|1392
*
7AZS|1|23SB|C|1453
7AZS|1|23SB|U|1454
*
7AZS|1|23SB|A|1646
7AZS|1|23SB|C|1647
7AZS|1|23SB|C|1648
7AZS|1|23SB|C|1649
7AZS|1|23SB|G|1650
7AZS|1|23SB|U|1651
7AZS|1|23SB|A|1652
7AZS|1|23SB|C|1653

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L23B

50S ribosomal protein L23

Chain L34B

50S ribosomal protein L34