J4_7AZS_027

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

7AZS|1|ESIA|U|8, 7AZS|1|ESIA|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZS_027 not in the Motif Atlas

Homologous match to J4_2CSX_001

Geometric discrepancy: 0.5157

The information below is about J4_2CSX_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_36296.3

Basepair signature

cWW-F-cWW-cWW-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7AZS|1|ESIA|A|7
7AZS|1|ESIA|U|8
7AZS|1|ESIA|A|9
7AZS|1|ESIA|G|10
*
7AZS|1|ESIA|C|25
7AZS|1|ESIA|A|26
7AZS|1|ESIA|G|27
*
7AZS|1|ESIA|C|43
7AZS|1|ESIA|G|44
7AZS|1|ESIA|U|45
7AZS|1|ESIA|G|46
7AZS|1|ESIA|U|47
7AZS|1|ESIA|C|48
7AZS|1|ESIA|C|49
*
7AZS|1|ESIA|G|65
7AZS|1|ESIA|U|66

Current chains

Chain ESIA

Phe-tRNA

Nearby chains

Chain S11A

30S ribosomal protein S11

Chain S7A

30S ribosomal protein S7