J4_7AZY_002

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7AZY_002 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1306

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_12410.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7AZY|1|E|C|185
7AZY|1|E|U|186
7AZY|1|E|A|187
7AZY|1|E|U|188
7AZY|1|E|G|189
*
7AZY|1|E|C|205
7AZY|1|E|G|206
7AZY|1|E|U|207
7AZY|1|E|C|208
*
7AZY|1|E|G|212
7AZY|1|E|A|213
7AZY|1|E|G|214
*
7AZY|1|E|C|226
7AZY|1|E|G|227
7AZY|1|E|U|228
7AZY|1|E|G|229
7AZY|1|E|U|230
7AZY|1|E|G|231

Current chains

Chain E

25S ribosomal RNA

Nearby chains

Chain G

5.8S ribosomal RNA; 5.8S rRNA

Chain p

60S ribosomal protein L4-A

Chain q

60S ribosomal protein L26-A