3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UUAG*CAC*GUGGUCG*CA
Length
16 nucleotides
Bulged bases
7B5K|1|9|U|8, 7B5K|1|9|C|48
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7B5K_001 not in the Motif Atlas
Homologous match to J4_1IL2_001
Geometric discrepancy: 0.5967
The information below is about J4_1IL2_001
Detailed Annotation
tRNA junction
Broad Annotation
No text annotation
Motif group
J4_70449.28
Basepair signature
cWW-F-cWW-cWW-cHS-F-cWW-cWW
Number of instances in this motif group
55

Unit IDs

7B5K|1|9|U|7
7B5K|1|9|U|8
7B5K|1|9|A|9
7B5K|1|9|G|10
*
7B5K|1|9|C|25
7B5K|1|9|A|26
7B5K|1|9|C|27
*
7B5K|1|9|G|43
7B5K|1|9|U|44
7B5K|1|9|G|45
7B5K|1|9|G|46
7B5K|1|9|U|47
7B5K|1|9|C|48
7B5K|1|9|G|49
*
7B5K|1|9|C|65
7B5K|1|9|A|66

Current chains

Chain 9
E-site val tRNA (76-MER)

Nearby chains

Chain 1
50S ribosomal protein L33
Chain g
30S ribosomal protein S7

Coloring options:


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