J4_7B5K_001
3D structure
- PDB id
- 7B5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUAG*CAC*GUGGUCG*CA
- Length
- 16 nucleotides
- Bulged bases
- 7B5K|1|9|U|8, 7B5K|1|9|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7B5K_001 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.5967
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7B5K|1|9|U|7
7B5K|1|9|U|8
7B5K|1|9|A|9
7B5K|1|9|G|10
*
7B5K|1|9|C|25
7B5K|1|9|A|26
7B5K|1|9|C|27
*
7B5K|1|9|G|43
7B5K|1|9|U|44
7B5K|1|9|G|45
7B5K|1|9|G|46
7B5K|1|9|U|47
7B5K|1|9|C|48
7B5K|1|9|G|49
*
7B5K|1|9|C|65
7B5K|1|9|A|66
Current chains
- Chain 9
- E-site val tRNA (76-MER)
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain g
- 30S ribosomal protein S7
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