J4_7B5K_002

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7B5K|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7B5K_002 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1132

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7B5K|1|A|C|268
7B5K|1|A|C|269
*
7B5K|1|A|G|370
7B5K|1|A|A|371
7B5K|1|A|G|372
7B5K|1|A|U|373
7B5K|1|A|A|374
7B5K|1|A|G|375
*
7B5K|1|A|U|399
7B5K|1|A|G|400
7B5K|1|A|A|401
7B5K|1|A|A|402
7B5K|1|A|U|403
7B5K|1|A|A|404
7B5K|1|A|U|405
7B5K|1|A|G|406
*
7B5K|1|A|C|421
7B5K|1|A|A|422
7B5K|1|A|A|423
7B5K|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28